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- 2HAM Demonstration
- 2HAM Video Demonstration
- 2PATS-search-ocaml
- 2PATS-tileset-search
- 4-sided Fractals in the 2HAM
- ATAM and kTAM Video Demonstration
- A Cargo-Sorting DNA Robot
- A Domain-Specific Language for Programming in the Tile Assembly Model
- A Tile-based Approach for Self-assembling Service Compositions
- Abstract Slat Assembly Model (aSAM)
- Abstract Tile Assembly Model (aTAM)
- Active Self-Assembly of Algorithmic Shapes and Patterns in Polylogarithmic Time
- Algorithmic Self-Assembly of DNA Sierpinski Triangles
- Algorithmic self-assembly
- Amoebots
- An Introduction to Tile-Based Self-Assembly and a Survey of Recent Results
- Assembly
- Asynchronous Signal Passing for Tile Self-Assembly: Fuel Efficient Computation and Efficient Assembly of Shapes
- Auto Counter Tiler
- Automated self-assembly programming paradigm
- Auxetic Two-Dimensional Nanostructures
- Baggins-expressions
- Binary pattern tile set synthesis is NP-hard
- Biomolecular Swarming Agents
- Building finite shapes
- Building finite shapes in the aTAM
- Building infinite shapes
- Building n by n squares
- Chemical Reaction Network (CRN)
- Circuit Simulation with Single-Stranded Tiles
- Co-transcriptional Folding
- Complexities for Generalized Models of Self-Assembly
- Computability and Complexity in Self-Assembly
- Computing in continuous space with self-assembling polygonal tiles
- Concentration programming
- Conferences
- Confluent Tile Assembly System
- Controlling Nucleation
- Cooperation
- Covert Computation
- Covert Computation in Self-Assembled Circuits
- Crystals that count! Physical principles and experimental investigations of DNA tile self-assembly
- DNA Origami
- DNA Punch Cards for Storing Data
- DNA Sticky End Design and Assignment for Robust Algorithmic Self-assembly
- DNA walker circuits: computational potential, design, and verification
- Decider Tiler
- Decreasing Errors by Increasing Redundancy
- Deterministic Tile Assembly Systems
- Diagonal and Non-Diagonal Glue Functions
- Directed (2HAM)
- Directed Tile Assembly Systems
- Discrete self-similar fractals
- Diverse and Robust Molecular Algorithms Using Reprogrammable DNA Self-Assembly
- Doubles and Negatives are Positive (in Self-Assembly)
- Dupled abstract Tile Assembly Model (DaTAM)
- Enhanced Tile Design
- Equivalence of Cellular Automata and the Tile Assembly Model
- Error Suppresion Via Block Replacement
- Exact Shapes and Turing Universality at Temperature 1 with a Single Negative Glue
- Facet Error Handling
- Facet Errors
- Fake conference
- Fibered Fractal Tiler
- Folding DNA to create nanoscale shapes and patterns
- Fuzzy Temperature Fault Tolerance
- Geometric Hindrance
- Geometric Tile Assembly Model (GTAM)
- Growth Errors
- Growth Frontier
- Hierarchical Self-Assembly of Fractals with Signal-Passing Tiles
- ISU TAS
- ISU TAS Tutorials
- IU Results in Diffusion-Restricted and Directed aTAMs
- Identifying Shapes Using Self-Assembly
- Identifying Shapes Using Self-Assembly (extended abstract)
- Impossibility and Efficiency Comparisions Between aTAM and 2HAM
- Increasing Redundancy Exponentially Reduces Error Rates during Algorithmic Self-Assembly
- Inspiration
- Integrating DNA strand-displacement circuitry with DNA tile self-assembly
- Intrinsic Universality in Self-Assembly
- Intrinsic Universality in the 2HAM
- Intrinsic Universality of the aTAM
- Intrinsic universality in tile self-assembly requires cooperation
- Kinetic Slat Assembly Model (kSAM)
- Kinetic Tile Assembly Model (kTAM)
- Limitations of Self-Assembly at Temperature 1
- List of Papers
- Magnetic Plasmon Networks Programmed by Molecular Self-Assembly
- Main Page
- Maze-Walking Tile Assembly Model
- Mismatch Errors
- Multiple Temperature Model
- NP Hard Problems
- Non-cooperatively assembling large structures:a 2D pumping lemma cannot be as powerful as its 1D counterpart.
- Nondeterminism
- Nubots
- Nucleation Errors
- On the Equivalence of Cellular Automata and the Tile Assembly Model
- One Tile to Rule Them All: Simulating Any Tile Assembly System with a Single Universal Tile
- One Tile to Rule Them All: Simulating Any Turing Machine, Tile Assembly System, or Tiling System with a Single Puzzle Piece
- Open Problems
- Oritatami
- OritatamiShapeMaker
- OritatamiSim
- OritatamiSim Simple Simulation Examples
- OxDNA
- PATS problem and tile set generation
- PH Controlled Assembly
- PH Controlled Assembly of DNA Tiles
- Parallelism and Time in Hierarchical Self-Assembly
- Pattern Self-Assembly
- Pattern Self-Assembly Software
- People
- Performing computations
- Ph-Controlled Assembly
- Polygonal Tile Assembly Model (Polygonal TAM)
- Polyomino Tile Assembly Model (polyTAM)
- Power of Self-Assembly at Temperature 1
- Probablistic assembly
- Program Size and Temperature in Self-Assembly
- Publications in self assembly
- PyTAS
- Random Number Selection
- Random Number Selection in Self-Assembly
- Randomized Self-Assembly for Approximate Shapes
- Reducing Tile Complexity for Self-Assembly Through Temperature Programming
- Reflections on Tiles (in Self-Assembly)
- Reflexive Tile Assembly Model (RTAM)
- Replication of arbitrary hole-free shapes via self-assembly with signal-passing tiles (extended abstract)
- Resiliency to Multiple Nucleation in Temperature~1 Self-Assembly
- Resources
- Restricted Glue TAS
- Robust self-replication of combinatorial information via crystal growth and scission
- RodSim
- Running time and program size for self-assembled squares
- STAM
- Self-Assembly of 3-D Structures Using 2-D Folding Tiles
- Self-Assembly of Arbitrary Shapes Using RNAse Enzymes: Meeting the Kolmogorov Bound with Small Scale Factor
- Self-Assembly of Arbitrary Shapes Using RNAse Enzymes: Meeting the Kolmogorov Bound with Small Scale Factor (extended abstract)
- Self-Assembly of Decidable Sets
- Self-Assembly of Discrete Self-Similar Fractals
- Self-Assembly of Fractals in the STAM
- Self-Assembly of Infinite Structures: A Survey
- Self-Assembly with Geometric Tiles
- Self-Healing
- Self-assembly for discreet, fault-tolerant and scalable computation on internet-sized distributed networks
- Shape Replication
- Shape Replication Through Self-Assembly and RNase Enzymes
- Sierpinski triangle
- Sierpinski triangle in the aTAM
- Sierpinski triangle in the kTAM
- Signal-passing Tile Assembly Model (STAM)
- Signal Transmission Across Tile Assemblies: 3D Static Tiles Simulate Active Self-Assembly by 2D Signal-Passing Tiles
- Simplifying the Role of Signals in Tile Self-assembly
- Simulation Window
- Simulation in the aTAM
- Simulation of Self-Assembly in the Abstract Tile Assembly Model with ISU TAS
- Simulation of aTAM by aSAM
- Simulation of the aTAM
- SlatTAS
- Slat Generator API
- Small tile sets that compute while solving mazes
- Snaked Proofreading
- Software self-assembly
- Solving np-complete Problems in the Tile Assembly Model
- Speed of Assembly
- Speed of Assembly in the 2HAM
- Speed of assembly
- Staged Self-Assembly
- Staged Self-Assembly: Nanomanufacture of Arbitrary Shapes with O(1) Glues
- Staged Tile Assembly Model
- Strict Self-Assembly
- Strict Self-Assembly of Fractals using Multiple Hands
- Strict self-assembly of discrete self-similar fractals
- Strong Fault-Tolerance for Self-Assembly with Fuzzy Temperature
- TAM DSL
- Temperature
- Temperature 1 Self-Assembly: Deterministic Assembly in 3D and Probabilistic Assembly in 2D
- Temperature Programming
- The Non-cooperative Tile Assembly Model Is Not Intrinsically Universal or Capable of Bounded Turing Machine Simulation
- The Power of Duples (in Self-Assembly): It's Not So Hip To Be Square
- The Signal-passing Tile Assembly Model (STAM)
- The Simulation Powers and Limitations of Higher Temperature Hierarchical Self-Assembly Systems
- The Three Windows
- The influence of temperature
- The tile assembly model is intrinsically universal
- The two-handed tile assembly model is not intrinsically universal
- Theory of Algorithmic Self-Assembly
- Thermodynamic Binding Networks (TBN)
- Tile Assembly Examples
- Tile Assembly System (TAS)
- Tile Automata
- Tile Lib
- Tile Set Designer
- Turing Machine Tiler
- Two-Handed Assembly Model (2HAM)
- Two-handed assembly (2HAM)
- Two Hands Are Better Than One (up to constant factors)
- Universal Computation with Arbitrary Polyomino Tiles in Non-Cooperative Self-Assembly
- Universal Shape Replication Via Self-Assembly With Signal-Passing Tiles
- Verification of 2HAM Systems
- Verification of aTAM systems
- Wang Tiling
- Weak Self-Assembly
- WebDNA
- WebTAS
- Window Movie Lemmas
- Windows, menus, and navigation
- Xgrow
- Your first tile assembly
- Zig-Zag Systems
- Zig-zag tile assembly system
