OxDNA

Description

oxDNA is a simulation code originally developed to implement the coarse-grained DNA model introduced by T. E. Ouldridge, J. P. K. Doye and A. A. Louis. It has been since reworked and it is now an extensible simulation+analysis framework. It natively supports DNA (oxDNA model), RNA (oxRNA model), Lennard-Jones and patchy particle simulations on both CPUs and NVIDIA GPUs.

Our group has extended oxDNA to support the integration of nanoparticles bound to DNA strands.

The main oxDNA web site can be found here:

https://dna.physics.ox.ac.uk/index.php/Main_Page

Download

https://dna.physics.ox.ac.uk/index.php/Download_and_Installation