Difference between revisions of "Growth Errors"

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In the [[Kinetic Tile Assembly Model | kTAM]], a growth error, an example of which can be seen in the figures below, occurs when one or more sides of a tile which binds to an assembly have glues which do not match the adjacent glues (called [[Glue Mismatches | glue mismatches]]).  Such a tile may bind with insufficient strength to remain permanently bound, but before it has an opportunity to dissociate, a previously unoccupied neighboring position may be filled by a tile which binds without mismatches, thus resulting in an assembly where every tile has sufficient strength to remain permanently attached despite the mismatch.  This essentially "locks" the incorrect tile into place and potentially allows assembly to proceed with an incorrectly placed tile which may cause further deviations from the desired shape or pattern.
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In the [[Kinetic Tile Assembly Model (kTAM) | kTAM]], a growth error, an example of which can be seen in the figures below, occurs when one or more sides of a tile which binds to an assembly have glues which do not match the adjacent glues (called [[Glue Mismatches | glue mismatches]]).  Such a tile may bind with insufficient strength to remain permanently bound, but before it has an opportunity to dissociate, a previously unoccupied neighboring position may be filled by a tile which binds without mismatches, thus resulting in an assembly where every tile has sufficient strength to remain permanently attached despite the mismatch.  This essentially "locks" the incorrect tile into place and potentially allows assembly to proceed with an incorrectly placed tile which may cause further deviations from the desired shape or pattern.
  
 
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Revision as of 14:26, 27 May 2014

In the kTAM, a growth error, an example of which can be seen in the figures below, occurs when one or more sides of a tile which binds to an assembly have glues which do not match the adjacent glues (called glue mismatches). Such a tile may bind with insufficient strength to remain permanently bound, but before it has an opportunity to dissociate, a previously unoccupied neighboring position may be filled by a tile which binds without mismatches, thus resulting in an assembly where every tile has sufficient strength to remain permanently attached despite the mismatch. This essentially "locks" the incorrect tile into place and potentially allows assembly to proceed with an incorrectly placed tile which may cause further deviations from the desired shape or pattern.

Sierpinski Growth Error
A partial assembly which is error-free.
Red cartouche
The binding of a tile with one glue match and one mismatch (shown by arrow).
not sure
Before the erroneously attached tile can detach, another tile (shown by arrow) attaches with 2 matching bonds so that all tiles are now connected by two correctly formed bonds
Example growth error in the kTAM: a tile initially binds with insufficient strength due to a mismatch, but the error is then "locked in" by a tile which arrives later.

















See also

Facet Errors

Nucleation Errors