Chemical Reaction Network (CRN)

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Chemical reaction network theory is an area of applied mathematics that attempts to model the behavior of real-world chemical systems. Its primary applications are in biochemistry and theoretical chemistry, however it has also attracted interest from pure mathematicians due to the interesting problems that arise from the networks and mathematical structures involved. CRN models utilize dynamical properties of simple mathematical or chemical abstractions of particles. The can form quite complex dynamical systems, some capable of simple or advanced computation [1]. Some assumed properties common to most if not all CRN systems: concentrations of reactants cannot be negative or zero, the rate of change of a given reactant or product type is assumed to be continuously differentiable, and many kinetic and physical considerations are often addressed via rules that pertain to mass action and reaction rates, among others. Many of the results in studies of CRNs involve the dynamics of the simulated reactor, such as the number of steady states, the stability of steady states, persistence of various species of reactants and products, network structure and temporal dynamics are often investigated as well. Artificial chemistries, models of early autopoiesis, are frequently concerned with the network structure, temporal and population dynamics of simple models of abstractions of prebiotic particles[2].


References

  1. Salehi, Sayed Ahmad, Parhi, Keshab K, Riedel, Marc D - Chemical reaction networks for computing polynomials
    ACS synthetic biology 6(1):76--83,2016
    Bibtex
    Author : Salehi, Sayed Ahmad, Parhi, Keshab K, Riedel, Marc D
    Title : Chemical reaction networks for computing polynomials
    In : ACS synthetic biology -
    Address :
    Date : 2016
  2. Fontana, Walter - Algorithmic chemistry
    Technical Report, Los Alamos National Lab., NM (USA) ,1990
    Bibtex
    Author : Fontana, Walter
    Title : Algorithmic chemistry
    In : Technical Report, Los Alamos National Lab., NM (USA) -
    Address :
    Date : 1990