OxDNA

Name

oxDNA

Description

oxDNA is a simulation code originally developed to implement the coarse-grained DNA model introduced by T. E. Ouldridge, J. P. K. Doye and A. A. Louis. It has been since reworked and it is now an extensible simulation+analysis framework. It natively supports DNA (oxDNA model), RNA (oxRNA model), Lennard-Jones and patchy particle simulations on both CPUs and NVIDIA GPUs.

Our group has extended oxDNA to support the integration of nanoparticles bound to DNA strands.